PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG103600.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 146aa    MW: 15452.4 Da    PI: 4.9111
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG103600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS127.91.1e-391145234374
                 GRAS 234 lsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319
                          ++P vv+++e+ea+ +++    ++ +r++ a++yysa+fd+lea++p+ s +r  vE+e+lg+ei  vva  g +   r + +e+W ++ 
  Pavir.1KG103600.2.p   1 MNPSVVTLAEREASIGGGdcpeDLHRRVATAMDYYSAVFDALEATAPPGSADRLAVEQEVLGQEIDAVVAPGGHA-GRRARGFESWAAAA 89 
                          69*************77657779**************************************************99.89999********* PP

                 GRAS 320 eeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          ++aG++p pls +a++qa+lllr ++ s+gy  ee +g+ +lgW++rpL+svS+W+
  Pavir.1KG103600.2.p  90 RAAGLSPRPLSAFAVSQARLLLRLYYpSEGYVAEEARGACFLGWQTRPLMSVSSWQ 145
                          *******************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.8121124IPR005202Transcription factor GRAS
PfamPF035143.8E-371145IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MNPSVVTLAE REASIGGGDC PEDLHRRVAT AMDYYSAVFD ALEATAPPGS ADRLAVEQEV  60
LGQEIDAVVA PGGHAGRRAR GFESWAAAAR AAGLSPRPLS AFAVSQARLL LRLYYPSEGY  120
VAEEARGACF LGWQTRPLMS VSSWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-161145232375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645406.12e-71PREDICTED: protein MONOCULM 1-like
RefseqXP_008645407.12e-71PREDICTED: protein MONOCULM 1-like
SwissprotQ84MM93e-55MOC_ORYSJ; Protein MONOCULM 1
TrEMBLK3Z0754e-79K3Z075_SETIT; Uncharacterized protein
STRINGSi019936m1e-78(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.14e-36GRAS family protein